Scale Single Cell Data According to Average Cell Type Profiles — cpm_cell_type • bseqsc

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Scale Single Cell Data According to Average Cell Type Profiles

cpm_cell_type(x, clusters, samples)

Arguments

x: matrix of raw counts
clusters: vector giving the cell type of each cell (i.e. column) in the data x. If x is an ExpressionSet object, it can also be the name (as a string) of the phenotypic variable to use.
samples: vector giving the sample of origin of each cell (i.e. column) in the data x. If x is an ExpressionSet object, it can also be the name (as a string) of the phenotypic variable to use.