All functions

Building a Basis Matrix of Reference Gene Expression Profiles

• bseqsc_basis

Color Theme for BSEQsc Vignettes

• bseqscColorTheme

Setup BSeq-SC External Dependencies

• bseqsc_config

Testing for Cell Type-Specific Gene Expression Differences

• bseqsc_csdiff

bseqsc: Deconvolution of Bulk Sequencing Experiments using Single Cell Data

• bseqsc
• bseqsc-package

Estimating Cell Type Proportions From Single Cell Data

• bseqsc_proportions

Scale Single Cell Data According to Average Cell Type Profiles

• cpm_cell_type

Fitting EdgeR Model

• fitEdgeR

MITRIB Lists known ribosomal or mitochondrial genes.

• getMITRIB

Ribosomal and Mitochondrial Genes

• MITRIB

Reference Basis Matrix of Pancreatic Islet Cell Types

• PancreasIslet

Marker Genes for Pancreas Islet Cells

• pancreasMarkers

Generates Heatmap of Basis Matrix

• plotBasis

Plots Total Count Per Cell Type

• plotCellTotals

Plotting Cell Type-Specific Expression Effect Size

• plotEffectSize

P-Value Scatter Plot

• pvalueScatter

Generates Random Single Cell Data

• rscData