Generates Heatmap of Basis Matrix

Draws a heatmap of reference cell type expression profiles, highlighting marker genes.

plotBasis(x, markers = NULL, scale = "r1", ...)

Arguments

x

matrix or cell type reference expression profiles (genes x cell types)

markers

named list of marker genes. The llist should be named using cell type names corresponding to column names in x. Genes are named using the identifiers corresponding to row names in x. Genes (rows) of x that are not in any element of markers are discarded. Columns of x that match no element in markers are discarded.

scale

scaling strategy. See NMF::aheatmap.

...

other arguments passed to NMF::aheatmap.